CHANGELOG

All notable changes to this project are documented in this file.

Version 5.1.1 is now available [here] (https://github.com/odelaneau/shapeit5/releases) as docker image or static binaries.

v5.1.1

* Bugfix of a nasty segfault, thanks to Ami Williams (23andMe).
* Correctin of a mistake in Ligate documentation   
* Bugfixes when reading multiple input files data	

v5.1.0

* Second release / Version used for phasing UKB WGS 200k data
* Chromosome X support added in phase_[common/rare]
* Pedigree phasing support added in phase_[common/rare/ligate]
* Many small optimizations in phase_[common/rare]
* IBD2 protection improved in phase_common abd added in phase_rare
* Automatic indexing of VCF/BCF files	

v5.0.0

* First release / Version used for the preprint. (https://doi.org/10.1101/2022.10.19.512867)