All notable changes to this project are documented in this file.
* Major release. Introduced speedups and accuracy improvements. Version used for the preprint. (https://doi.org/10.1101/2022.11.28.518213)
* Removed bug in haploid imputation * Removed bug reading imputing regions with spanning indels (bug reported by @MySelvan) * Removed bug in INFO score calculation * Refactory model classes (cast) * Added --inputGL option * Added --ban-repeated-sample-names option
* Better reporting of missing genotype likelihoods and ploidy * Added multi-threaded input for VCF/BCF files * Added haploid/diploid/mixed ploidy imputation * Added FPLOIDY parameter in output * Small improvements in the PBWT selection
* Version used for the paper (https://doi.org/10.1038/s41588-020-00756-0) * Change in the state selection for phasing * Bugfix for compatibility with bcftools 1.10.x regarding --main
* First release. Version used for the preprint (https://doi.org/10.1101/2020.04.14.040329)