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CHANGELOG

All notable changes to this project are documented in this file.

v2.0.0 

* Major release. Introduced speedups and accuracy improvements. Version used for the preprint. (https://doi.org/10.1101/2022.11.28.518213)

v1.1.1 

* Removed bug in haploid imputation
* Removed bug reading imputing regions with spanning indels (bug reported by @MySelvan)
* Removed bug in INFO score calculation
* Refactory model classes (cast)
* Added --inputGL option
* Added --ban-repeated-sample-names option

v1.1.0 

* Better reporting of missing genotype likelihoods and ploidy
* Added multi-threaded input for VCF/BCF files
* Added haploid/diploid/mixed ploidy imputation
* Added FPLOIDY parameter in output
* Small improvements in the PBWT selection

v1.0.1 

* Version used for the paper (https://doi.org/10.1038/s41588-020-00756-0)
* Change in the state  selection for phasing
* Bugfix for compatibility with bcftools 1.10.x regarding --main

v1.0.0 

* First release. Version used for the preprint (https://doi.org/10.1101/2020.04.14.040329)